Skip to content
LogoTechnipages
LogoTechnipages
  • Topics
        • Android
        • Browsers
        • Gaming
        • Hardware
        • Internet
        • iPhone
        • Linux
        • macOS
        • Office
        • Reviews
        • Software
        • Windows
        • Definitions
        • All Recent Posts
  • Product Reviews
  • About

System32 Folder Opens on Startup – How to Fix

Evan MercerDecember 31, 2025 Comments (0)
system32 folder opens on startup

If you’re wondering if it’s normal that your System32 folder opens on startup, it’s not. The System32 folder is a critical part of the Windows operating system and, generally speaking, shouldn’t be tampered with. So, unless you’ve specifically set the folder to open on startup, there’s no reason it should open when Windows boots up.

Contents

  • 1 What Causes the System32 Folder to Open on Startup?
  • 2 How to Stop System32 Opening on Startup
    • 2.1 Check Startup Paths
    • 2.2 Perform a Clean Boot
    • 2.3 Run a Full System Antivirus Scan
    • 2.4 Run System File Checker (SFC)
    • 2.5 Use DISM to Repair the System Image
    • 2.6 Check Task Scheduler
    • 2.7 Check the Registry
    • 2.8 System Restore
    • 2.9 If All Else Fails…

What Causes the System32 Folder to Open on Startup?

Usually, the System32 folder opens on startup due to:

  • A third-party application
  • A corrupted registry value
  • A misconfigured startup item

However, it could also be due to malware.

Trojan variants like Trojan.System32, worms such as Worm:Win32/Cabresov.A, and other forms of malware often disguise themselves as legitimate files in or target the System32 folder to evade detection.

How to Stop System32 Opening on Startup

To stop the System32 folder from opening on startup, follow these steps in order.

Check Startup Paths

Step 1. Press Win+R to open the Run command.

Step 2. Type “shell:startup” and press “Enter” to open the Startup folder.

System32 Folder Opens on Startup – How to Fix 1

Step 3. Delete any shortcuts related to System32 or suspicious entries, especially those pointing to Libraries.

Perform a Clean Boot

Step 1. Press Win+R.

Step 2. Type “msconfig” and press “Enter.”

System32 Folder Opens on Startup – How to Fix 2

Step 3. In the System Configuration window, go to the Services tab. Check “Hide all Microsoft services” and click “Disable all.”

System32 Folder Opens on Startup – How to Fix 3

Step 4. Switch to the Startup tab.

System32 Folder Opens on Startup – How to Fix 4

Step 5. Click “Open Task Manager.”

Step 6. Disable all startup items. Restart your computer.

If the issue is resolved, re-enable services and startup items one by one to identify the culprit.

Run a Full System Antivirus Scan

Step 1. Perform a full system scan with Windows Defender or a trusted third-party antivirus.

Step 2. Remove any identified threats and restart the system.

Run System File Checker (SFC)

Step 1. Search for “command prompt,” right-click it, and select “Run as administrator.”

System32 Folder Opens on Startup – How to Fix 5

Step 2. Type SFC /scannow and press “Enter.”

System32 Folder Opens on Startup – How to Fix 6

Step 3. Wait for the scan to complete.

Step 4. If corrupted system files are found and repaired, restart the system.

Use DISM to Repair the System Image

If SFC fails to fix the issue, run the DISM command. It repairs the Windows image, which sometimes resolves underlying file corruption.

Step 1. Search for “command prompt,” right-click it, and select “Run as administrator.”

System32 Folder Opens on Startup – How to Fix 5

Step 2. Type Dism /Online /Cleanup-Image /RestoreHealth (including the spaces) and press “Enter.”

System32 Folder Opens on Startup – How to Fix 7

Check Task Scheduler

Step 1. Press Win+R to open the Run command.

Step 2. Type “taskschd.msc” and press “Enter” to open Task Scheduler.

System32 Folder Opens on Startup – How to Fix 8

Step 3. Disable any tasks scheduled at startup that reference System32.

System32 Folder Opens on Startup – How to Fix 9

Check the Registry

Step 1. Press Win+R to open the Run command.

Step 2. Type “regedit” and press “Enter” to open the Registry Editor.

System32 Folder Opens on Startup – How to Fix 10

Step 3. Click “File -> Export” to back up the registry before making any changes.

System32 Folder Opens on Startup – How to Fix 11

Step 4. Check the following startup keys and cautiously delete any suspicious entries:

System32 Folder Opens on Startup – How to Fix 12

HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Run

  • Contains programs set to run when the current user logs in

HKEY_LOCAL_MACHINE\Software\Microsoft\Windows\CurrentVersion\Run

  • Lists programs that start for all users

HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\RunOnce

  • Entries here run once and are typically deleted afterward

HKEY_LOCAL_MACHINE\Software\Microsoft\Windows\CurrentVersion\RunOnce

  • Similar to RunOnce for the local machine

HKEY_LOCAL_MACHINE\Software\Microsoft\Windows NT\CurrentVersion\Winlogon\Userinit

  • Should only point to userinit.exe – malware may append additional entries

HKEY_LOCAL_MACHINE\System\CurrentControlSet\Control\BootVerificationProgram

  • Can be abused to run malicious programs during boot

HKEY_CURRENT_USER\Software\Microsoft\Windows\CurrentVersion\Policies\Explorer\Run

  • Policy-based startup entries for the current user

System Restore

If the issue persists, restore your system to a point before the problem started occurring.

Step 1. Search for “recovery” in the Start menu.

Step 2. Open the Recovery panel.

Step 3. Select “System Restore” to choose a restore point.

If All Else Fails…

If none of the above steps work, consider a clean installation of Windows using the Media Creation Tool. Remember to wipe all disk partitions during setup to avoid any residual issues.

Categories: Windows

Author Evan Mercer

I’m a computer science grad who loves to tinker with smartphones and tablets in my spare time. When I’m not writing about how to fix techy problems, I like hanging out with my dogs and sipping nice wine after a tough day.

You Might Also Like

  • Gear Icon Header

    Enable/Disable Numlock at Windows Startup

    Mitch BartlettWindows
  • Windows 10: Enable/Disable On-Screen Keyboard

    Mitch BartlettWindows
  • Windows 7: Fix Code 80243004 Error When Installing Updates

    Mitch BartlettWindows
  • windows-system-registry-file-missing-or-contains-errors

    Fix: System Registry File Is Missing or Contains Errors

    Madalina DinitaWindows

Leave a Reply

Your email address will not be published. Required fields are marked *

  • browser keeps opening hp support

    Browser Keeps Opening HP Support Assistant Tabs 

  • camera not working in vmware

    Camera Not Working in VMware – How to Fix

  • browser screen goes black

    Browser Screen Goes Black Intermittently 

  • computer heating up in hyper v

    Computer Heating Up When Using Hyper-V – How to Fix 

  • clipchamp unexpected application error

    Clipchamp Unexpected Application Error: Here’s the Solution 

profile pic

The Experts Behind Technipages

My name is Mitch Bartlett. I've been working in technology for over 20 years in a wide range of tech jobs from Tech Support to Software Testing. I started this site as a technical guide for myself and it has grown into what I hope is a useful reference for all.

Learn More

technipages logo white
linkedin icon

Technipages is part of Guiding Tech Media, a leading digital media publisher focused on helping people figure out technology. Learn more about our mission and team here.

© 2026 Guiding Tech Media All Rights Reserved

  • About Us
  • Contact
  • Terms of Use
  • Privacy Policy

© 2026 Guiding Tech Media All Rights Reserved

Information from your device can be used to personalize your ad experience.
Do not sell my personal information.